Impact of Nectarivorous Yeasts on Silene caroliniana's Scent
Annette M. Golonka, Bettie Obi Johnson, Jonathan Freeman, and Daniel W. Hinson
Eastern Biologist, Number 3 (2014):1–26
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2014 Eastern Biologist No. 3
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2014 EASTERN BIOLOGIST 3:1–26
Impact of Nectarivorous Yeasts on Silene caroliniana’s Scent
Annette M. Golonka1,*, Bettie Obi Johnson1, Jonathan Freeman1,2,
and Daniel W. Hinson1,3
Abstract - Silene caroliniana is considered a scentless flower, but is insect-pollinated
and produces a nectar reward. This plant is host to nectar-associated Metschnikowia yeast
species. In this study, the scent profile of S. caroliniana was determined, and the contribution
of nectar inhabiting yeasts to its scent was evaluated using solid phase micro-extraction
and gas chromatography-mass spectrometry (SPME-GC-MS). We identified the scent compounds
produced by nectar isolated Metschnikowia species and determined their impact on
the flower’s scent. Analyses of the scent profiles of unvisited nectar, unvisited flowers, and
visited nectar confirmed that this plant produced few scented compounds unless microbial
organisms were present in the nectar. Metschnikowia species contributed aliphatic alcohols,
including ethanol, 2-methyl-1-propanol, 3-methyl-1-butanol, and 2-methyl-1-butanol to
S. caroliniana’s scent.
Introduction
Floral color, scent, and morphology are important features in attracting pollinators
to flowers (Andersson 2006, Chittka and Raine 2006, Dobson 2006, Farré-
Armengol et al. 2013, Fenster et al. 2004, Kunze and Gumbert 2001, Smith et al.
2006, Wright and Schiestl 2009). The fragrances emitted by flowers serve a wide
range of purposes including the attraction of nectar-feeding pollinators and the
repulsion of predatory visitors (Armbruster 1997, Cunningham et al. 2004, Dötterl
et al. 2006, Farré-Armengol et al. 2013, Junker and Bluthgen 2010, Raguso 2008).
Floral scent may be produced by a number of floral structures, including petals,
sepals, anthers, stigmas, and nectaries (Dötterl and Jürgens 2005, Effmert et al.
2006, Farré-Armengol et al. 2013, Goodrich et al. 2006, Jetter 2006). Floral scent
compounds comprise a wide variety of volatile organic compounds (VOCs) that
vary qualitatively and quantitatively between plant species, and include benzenoids
(e.g., benzaldehyde, phenyl acetaldehyde, methyl salicylate), terpenoids (e.g., lilac
aldehydes, α-pinene), and fatty acid derivatives (e.g., cis-3-hexenyl acetate, cis-
3-hexenol) (Dötterl et al. 2005, Farré-Armengol et al. 2013, Knudsen et al. 2006).
The biosynthetic pathways involved in the production of floral odors along with
their spatial and temporal regulation and pattern have been well studied for a large
number of plant species (Dudareva and Pichersky 2006).
Floral scent is used by some pollinators, such as bees, to locate flowers and cue
them in to a food source such as nectar (Chittka and Raine 2006, Heinrich 1979,
Wright and Schiestl 2009). Diurnal pollinators such as butterflies and hawkmoths
utilize color as the predominant mechanism to locate flowers with scent enhancing
1Math, Science, Nursing, and Public Health, University of South Carolina Lancaster,
Lancaster, SC, 29720. 2Current address - Rock Hill, SC 29730. 3Current address - Charleston,
SC 29407. *Corresponding author - golonkam@mailbox.sc.edu
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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the learning process and increasing floral constancy (Andersson 2006, Kelber et al.
2003). Nectar is the most common floral reward a plant produces to attract pollinators
(Simpson and Neff 1983), and attracting nectar-feeding pollinators is important
for the reproductive success of many plant species (Majetic et al. 2009, Raguso
2004). Nectar is used by pollinators as an energy source (Carpenter 1983, Heinrich
1983) because it is high in sugars and amino acids and may also contain smaller
concentrations of proteins, lipids, essential oils, polysaccharides, antioxidants,
alkaloids, and vitamins (Baker and Baker 1983, Dafni 1992). It is also a potential
habitat for microorganisms, such as yeasts (Belisle et al. 2012; Brysch-Herzberg
2004; de Vega et al. 2009; Eisikowitch et al. 1990; Golonka and Vilgalys 2013;
Grüess 1917; Hautmann 1924; Herrera et al. 2008, 2009; Lund 1954; Nadson and
Krassilnikov 1927; Phaff 1978). Recent studies suggest that nectarivorous yeasts,
and potentially other microbes, may alter nectar quality by altering sugar composition
(Canto et al. 2007, 2008; de Vega et al. 2009; Herrera et al. 2008), floral odor
(Goodrich et al. 2006), floral temperature (Herrera and Pozo 2010), and potentially
flower attractiveness to pollinators (Kevan et al. 1988).
In the Caryophyllaceae family of angiosperms, floral scent has been well
characterized in several species (Knudsen et al. 2006). For example, Silene
latifolia Poiret has a strong floral scent comprised predominately of the terpenoids
trans-β-ocimene and lilac aldehyde isomers (Dötterl and Jürgens 2005, Dötterl et
al. 2005, Waelti et al. 2008). This flower’s scent has been found to attract moths
such as Hadena bicruris Hufnagel, who use the plant for nectar drinking and oviposition
(Dötterl et al. 2006). Silene caroliniana Walter, a diurnal hermaphroditic
angiosperm native to eastern North America, has intermediate-sized, tubular pink
flowers that are considered scentless (Fenster et al. 2004, Reynolds et al. 2009).
Silene caroliniana is pollinated predominately by large bees and diurnal clearwing
hawkmoths (Reynolds et al. 2009, Reynolds and Fenster 2008). Although this plant
is considered scentless, the authors noticed a light fragrance associated with the
flowers while conducting a yeast diversity study on S. caroliniana. In addition,
yeast samples extracted from the flower nectar and grown in the laboratory emit an
odor similar to the scent detected in the field. These observations led the authors to
investigate the floral scent associated with this plant.
High concentrations of yeasts (up to 105 cells per μL of nectar) have regularly
been found to occur in the floral nectar of many plant species with yeast concentrations
correlating mostly with bumble bee visitations (Herrera et al. 2009). Specific
yeast species isolated from Silene latifolia included Metschnikowia spp. Grimm,
Microbotryum violaceum (Persoon) Deml & Oberwinkler, and Aureobasidium
pullulans (de Bary) Arnaud (Golonka and Vilgalys 2013). Nectarivorous yeasts
are known to decrease sugar concentration and distribution in floral nectars (Canto
and Herrera 2012, de Vega et al. 2009) and potentially degrade the quality of nectar
(Herrera et al. 2008). The presence of yeasts in nectar has also been shown to increase
pollinator visitation time (Golonka 2002). The reason for this has not been determined
but it may be the result of microbes changing the scent or quality of the nectar as has
been found in other plant species (Pozo et al. 2009).
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
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In this study, we isolated and identified the most common species of yeasts
inhabiting the nectar of S. caroliniana flowers. We sampled two populations of
S. caroliniana in South Carolina. We determined the volatile organic compounds
produced by these yeasts using static solid phase microextraction sampling (SPME)
with gas chromatography-mass spectrometry detection (GC-MS). The SPMEGC-
MS technique has been well established as an effective method for the analysis
of volatiles emitted by flowers and flower parts (Flamini et al. 2003, Goodrich et
al. 2006, Goodrich and Raguso 2009). The objectives of this study were to 1) determine
the floral scent of S. caroliniana, which has not previously been characterized,
2) identify the VOCs associated with nectar and flower samples taken from unvisited
(unopened) flowers, 3) identify the VOCs produced by the common nectar
inhabiting yeast species of S. caroliniana, Metschnikowia reukaufii Pitt & Miller
and M. koreensis Hong, Chun, Oh & Bae, and 4) compare the VOCs produced by
yeasts to the VOCs found in visited and unvisited nectar and flowers.
Methods
Study sites
We collected flowers of Silene caroliniana (wild pink, Caryophyllaceae) during
March and April in 2012 from 2 different populations approximately 67 km apart.
The first population was in the Sandhills Research and Education Center (SREC)
which is run by Clemson University in Columbia, SC), 34°08.147'N, 080°52.395'W.
The second population was in the Forty Acre Rock Nature Preserve (FAR) which is
run by the Department of Natural Resources in Kershaw, SC. We sampled several
subpopulations along a main trail FAR2 (34°40.187'N, W 080°31.500'W), FAR3
(34°40.022'N, 080°31.468'W), and FAR7 (34°39.971'N, 080°31.478'W).
Sample collection and processing
Initially, we collected 4 types of samples from Silene caroliniana: 1) Visited
Nectar (VN), nectar extracted from open flowers in the field, 2) Unvisited Nectar
(UN), nectar extracted from flowers 48 h after unopened flowers collected in
the field opened in the lab under ambient conditions of light and temperature,
3) Unvisited Flowers (UF), intact flowers analyzed 48 h after unopened flowers
collected in the field had opened in the lab, and 4) Visited Flowers (VF), intact
flowers collected from the field analyzed 24 h after collection. This last sample
category is not included in the data set because only a few samples could be
collected due to small plant population size and flower abundance. Samples that
were collected had either no VOCs present or only acetone with low peak area
(n = 2). During flower collection, we noted that sticky hairs along the stems and
on the sepals might pose a sterility issue, potentially impacting both unvisited
flower and nectar samples. In addition to collecting nectar and flower samples,
we collected control samples for each sample type in appropriate vials (either
4 mL or 2 mL) to control for scent of the environment (i.e., background noise)
and gas-off compounds from the vials.
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Visited nectar collection. We used sterile microcapillary tubes (1 μL) to collect
nectar from flowers located in SREC and FAR. We sampled flowers during March
and April between 09:00 and 12:30. The flowers of Silene caroliniana are protandrous
and remain open for approximately 3–5 d. Flowers were considered “visited”
by pollinators if flowers were open, anthers were dehisced or beginning to dehisce,
and stigmas were not completely extended (i.e., flowers were ~24–48 h old).
Sample status as “visited” was confirmed by the presence of yeast by plating the
nectar on media following VOC analyses (see Yeast Isolation below), past research
has indicated that unvisited flowers do not contain yeast while visited flowers do
(Golonka, 2002). Flowers from individually numbered plants were removed by
cutting the stem just below the sepals and petals, flower petals were pulled back
to expose nectaries, and nectar was extracted until ~ 2 μL of nectar was collected
from each plant whenever possible. These samples were labeled visited nectar. The
volume of nectar extracted per flower varied between 0.02 and 1.0 μL of nectar.
Flowers at FAR had significantly lower nectar volumes (mean = 0.1 μL) than
flowers at SREC (mean = 0.5 μL, t = 2.0, df = 8, P = 0.04). This difference in
nectar volume among flowers meant that we had to combine extracted nectar from
more flowers at FAR to acquire enough nectar for sample analysis. At SREC, we
extracted nectar from a total of 23 flowers from 5 plants (~4 flowers per plant) to
produce 6 samples. At FAR, we extracted nectar from a total of 13 flowers from
6 plants to produce 4 samples for analyses. After nectar was collected, we recorded
the length of nectar in each microcapillary and used a bulb to blow the contents into
sterile 2 mL GC vials with Teflon/red rubber septa (National Scientific, Rockwood,
TN, part #C4000-80). We sterilized all glass SPME and GC vials used for sampling,
we did not sterilize the caps, because they emit VOCs if they are autoclaved. We
used controls to confirm the sterility of caps, vials, and microcapillary tubes used
to sample flowers and nectar. Microbes were allowed to grow for 24 h after collection
of controls and then the samples were tested for the presence of VOCs using
headspace SPME-GC-MS.
Unvisited nectar collection. We collected unopened flowers from plants in SREC
and FAR during March and April 2012. We selected unopened flowers with petals
visible and extended but with the corolla still tightly curled. We cut flower stems
just below the sepals and petals, and immediately placed flowers in sterile 4 mL
SPME vials with PTFE/silicone septa (Supelco, part #27136) containing 0.5 mL
sterile distilled water. Flowers were allowed to open in the lab under ambient light
and temperature similar to the field conditions. Unvisited nectar was extracted 48 h
after each flower was collected to mimic the visited nectar samples taken from
flowers already 24 h old. We also used the same target volume of nectar, 2 μL, as
used with visited nectar. We placed nectar in sterile 2 mL GC vials and conducted
headspace SPME-GC-MS analysis 48 h after collection (see Headspace SPMEGC-
MS analysis below). From SREC, we collected 5 unvisited nectar samples by
sampling flowers from 3 plants and all but 1 of the samples had 2 μL of nectar. The
unvisited flowers from SREC had greater nectar stores than the flowers from FAR.
As a result, we needed to combine extracted nectar from more flowers from FAR
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to obtain a single unvisited nectar sample for analysis. This sample was left out of
statistical analyses.
Unvisited flower collection. We collected unopened flowers as described above
from SREC and FAR. We treated flowers for unvisited flower collection the same
way we treated flowers for unvisited nectar collection and analyzed flowers via
headspace SPME-GC-MS. At each site, we collected flowers from 4 plants. We
collected 5 unopened flowers from SREC and 4 unopened flowers fro m FAR.
Yeast isolation and identification by molecular techniques
Yeast isolation. After we analyzed samples using SPME-GC-MS, we serially
diluted visited and unvisited nectar samples by adding sterile distilled water for
final dilutions of 10-2 and 10-3, based on nectar volume initially placed in the SPME
vial. These dilutions were then vortexed for 1 min, and for each dilution, we spread
2 aliquots of 50 μL for 10-2 dilutions and 100 μL for 10-3 dilutions onto 2 plates
of potato dextrose agar (PDA) with 0.1 % yeast extract. We incubated plates at
ambient lab temperature (21–25 °C) for 2–4 days. This dilution procedure occurred
48 h after initial collection of visited nectar samples and 48 h after initial collection
of unvisited nectar from flowers allowed to bloom in the lab (i.e., 72–96 h after
initial field collection of unopened flowers).
Identification of yeast species. Once yeast colonies were visible on the serial
dilution plates, we counted colonies and separated them into 4 morphospecies labeled
types 1a, 1b, 2, and 3. Morphospecies were identified based on the following characteristics:
colony color (e.g., pigmentation, lack of pigmentation), colony shape (e.g.,
amorphous, circular), colony margin (e.g., entire, undulating, filamentous), colony
surface (e.g., shiny, dull, smooth), colony texture (e.g., mucoid, viscous), colony
elevation (e.g., flat, convex, raised), cell shape (e.g., ovoidal [oval], ellipsoidal,
cylindrical [rod], elongate [long and narrow], triangular, globose [spherical]), cell
size (tiny cells [< 1.0 μm], small cells [1.0–2.0 μm], medium cells [2.0–3.5 μm], and
large cells [> 3.5 μm]), filamentation (e.g., pseudohyphae or hyphae), and vegetative
reproduction method (budding, fission, conidia formation). This terminology and
categorization was taken from Kurtzman and Fell (1998). Sixteen strains were used
for molecular identification. We used 4 of these strains for further analyses with pseudonectar
(see below). Because we extracted chromosomal DNA from the majority of
isolates, we temporarily maintained only representative strains.
We used molecular systematic techniques to identify the morphospecies. This
method is used extensively in identification of both culturable and unculturable
strains of fungi (Arnold et al. 2000, Brysch-Herzberg 2004, Golonka and Vilgalys
2013, Head et al. 1998, Herzberg et al. 2002, Hong et al. 2003, Kurtzman and Blanz
1998, Kurtzman and Fell 1998, Lachance et al. 2003, Pozo et al. 2011, Sugita et
al. 1999). We extracted nuclear DNA according to the method of Xu et al. (2000)
utilizing a lysing and protoplasting buffer. We identified yeast by PCR amplification
and sequencing approximately a 1.2 kb section of the internal transcribed spacers
(ITS1 and ITS2) and the D1/D2 region of the large subunit nrDNA following
the methods of Kurtzman and Robnett (1997) and Fell et al. (2000). We used the
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primers ITS1 (5'-TCC GTA GGT GAA CCT GCG G-3') and NL4 (5'-GGT CCG
TGT TTC AAG ACG G-3'). We performed PCR for 35 cycles with denaturation at
95 °C for 1 min, annealing at 62 °C for 1 min, and extension at 72 °C for 1 min.
Cycle sequencing was conducted by Engencore (University of South Carolina,
Columbia, SC) with ITS1 and NL4 primers. Sequences were aligned and trimmed
using Geneious software (Drummond et al. 2010).
We submitted the D1/D2 region of the large subunit to GenBank BLAST
searches and recorded the most probable taxonomic match for each sequence
following Kurtzman and Robnett (1997), Fell et al. (2000), and Scorzetti et al.
(2002). If nucleotide substitutions occurred in less than 2% of the D1/D2 region
when compared to BLAST search results (modified from Kurtzman and Robnett
1997, Peterson and Kurtzman 1991), we identified isolates to the closest species.
When possible, a section of DNA containing ITS1, 5.8S, and ITS2 was secondarily
submitted to GenBank BLAST searches as support for taxonomic identification.
Pseudonectar experiments
Pseudonectar. Pseudonectar (49.9% sugars w:v) was made by dissolving sucrose,
glucose, and fructose in sterile water with final concentrations of 0.5%, 43%, and
57% (w:v) respectively (concentrations based on Baker and Baker 1983, Jürgens et
al. 2002, and field-collected nectar from SREC, 44.1% sugar, J. Freeman, unpubl.
data). We selected this sugar concentration and composition to mimic a generic high
hexose/low sucrose nectar as found in other Silene species (Witt et al. 1999), with a
sucrose concentration similar to Silene latifolia, a species studied by Golonka that
is known to contain Metschnikowia yeast species (Golonka and Vilgalys 2013).
We filter-sterilized (0.20 μm, Fisherbrand part #09-719C) pseudonectar and then
used a refractometer (Abbe ThermoSpectronic, Rochester, NY) to confirm fructose
and glucose concentrations. We created a standard curve for %fructose to calculate
%glucose because glucose and fructose have similar refractive index values. We
plated a sample of pseudonectar to confirm sterility of the solution and ran SPMEGC-
MS analysis on a sample as a control.
Yeast grown in pseudonectar. We grew 4 strains of yeast (M. reukaufii: 3FAR2
and 27SREC3, M. koreensis: strains 7FAR3 and 3FAR3) for 24 h on PDA with 0.1%
yeast extract (w:v). We transferred cells to sterile pseudonectar, vortexed for 1 min,
and then counted 5 medium squares on 5 hemacytometer chambers to determine
cell count of each solution. For each strain of yeast, we adjusted cell concentration
to ~6000 cells/μL (No) and transferred 2.0 μL of this solution to sterile 2 mL-GC
vials for VOC analysis using headspace SPME-GC-MS after 24 h, 48 h, or 72 h of
cell growth. Preliminary testing comparing 2 μL and 200 μL samples determined
that the sample volume did not affect the number of VOCs present in the headspace
nor the relative percentage of each VOC. We used 2 μL of solution because it is
closer to the volume used with field-collected samples. At the same time, we set up
samples containing 200 μL of yeast/pseudonectar to determine yeast growth rate
from cell concentration (cells/μL) at the end of each growth period: 24 h, 48 h, and
72 h (Nf). We incubated samples at room temperature and light levels similar to field
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conditions (12 h on, 12 h off). For each growth period, we set up 3 samples of yeast
grown in pseudonectar for strains M. reukaufii 27SREC3 and M. koreensis 3FAR3
and 4 samples for strains M. reukaufii 3FAR2 and M. koreensis 7FAR3 (n = 7 for
each yeast species). For determination of cell concentration, we opened the larger
volume vials after 24 h, 48 h, or 72 h (tf), vortexed each vial and then counted cells
on 5 medium squares of 5 hemacytometer grids. These samples were not used for
VOC analysis. We used the exponential growth equation Nf = Noert to calculate r, the
intrinsic growth rate (min-1), where N0 = initial population size (6000 cells/μL, the
initial inoculum), Nf = population size at time tf (based on cell counts in solutions
for each growth period), and t = time from t0 to tf (min). We calculated the intrinsic
growth rate for each sample using the equation r = (ln Nf – ln No)/t. We used controls
to confirm sterility of caps, vials, and pseudonectar.
Analysis of VOCs using Headspace SPME-GC-MS
Samples. We analyzed 6 categories of samples by headspace SPME-GC-MS:
1) visited nectar (VN), 2) unvisited nectar (UN), 3) unvisited flower (UF),
4) pseudonectar inoculated with yeast (PN), 5) air and vial controls at each field
site and lab where nectar was collected, and 6) pseudonectar control samples (2 μL)
without yeast present to determine a background VOC profile. The appropriate
control samples were collected and run every time samples were collected.
Headspace SPME-GC-MS analysis. Volatile compounds emitted from the
samples described above were collected by headspace solid phase micro-extraction
(SPME) using a manual SPME fiber holder (Supelco, part #57347-U) and SPME
fiber coated with divinylbenzene/carboxen/polydimethylsiloxane (50/30 μm
DVB/CAR/PDM, Supelco part #57348-U). This SPME fiber was chosen because it
provides excellent adsorption and desorption with minimal carryover between injections.
A time-dependent extraction study showed the extraction reached equilibrium
within 12 minutes, therefore, a 15 minute extraction time was used for all analyses.
We thermally conditioned fibers at 275 °C for 1 h and ran a blank fiber injection each
day to verify no contaminants would bleed from the fiber during sample runs.
To analyze volatile compounds, we used a Shimadzu QP 2010S GC-MS system
(Columbia, MD) with ultra-high-purity grade helium (99.9995% pure, Airgas
National Welders, part #325541) as the carrier gas and a 30-meter-5% phenyl
methyl silicone column (SHR5XLB, 30 m × 0.25 mm × 0.25 μm). We used a lowvolume
inlet liner (Shimadzu part #220-94769-00) and low-bleed thermo-green
septum (Shimadzu part #221-35507-02) for the SPME injection. The SPME fiber
was thermally desorbed at 275 °C in splitless injection mode for 0.5 min at a
sampling depth of 4.5 mm. The GC−MS oven temperature was maintained at 31 °C
for 5 min, increased to 200 °C at a rate of 20 °C per minute, held at 200 °C for
1.05 min, increased to 250 °C at a rate of 20 °C per minute, then held at 250 °C for
3.0 min for a total run time of 20.0 min. The mass spectrometer scanned over a mass
range of 30.00 to 300.00 m/z units for the entire 20 minute run time. The fiber was
left in the injection port for the entire run to ensure complete removal of volatile
compounds from the fiber to prevent carryover between injections. We tested the
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effectiveness of this cleansing method for the SPME fiber by injecting blank fibers
after sample runs. The blank fibers produced little or no detectable compounds.
Compounds were tentatively identified using Wiley and National Institute of
Standards and Technology mass spectral libraries (with more than 120,000 mass
spectra), and then verified by co-injection of standard compounds found in the
samples. We performed semi-quantitative analysis by integrating all chromatographic
peaks, removing peaks present in the control samples (< 10:1 sample:control
peak area ratio), and calculating relative percent areas (abundances) for each
remaining peak by dividing the peak area of each compound by the sum of all
peaks for a given sample. We determined Kovats retention indices for each peak
using a standard mixture of alkanes (C7-C40), pure hexane (C6), pentane (C5), and
butane (C4) standards.
Data analyses
Univariate analyses (PROC UNIVARIATE, SAS Institute Inc., 2012) indicated
data were non-normally distributed. Therefore, we used multivariate analyses,
MDS, Cluster, and PERMANOVAs (Clarke 1993), to compare the overall scent
profile of each sample and non-parametric tests Wilcoxon, and Kruskal-Wallis
(NPAR1WAY, SAS Institute Inc. 2012) to compare relative percent areas of each
compound and total peak area of VOCs across sample types. All analyses were
conducted in either PRIMER v6 with the PERMANOVA+ add-on package (Clarke
and Gorley 2006) or SAS (SAS Institute Inc. 2012). We used relative peak areas
to conduct non-metric multidimensional scaling (MDS) analyses (Clarke and
Warwick 2001, Majetic et al. 2014). Relative peak areas were used to calculate a
similarity matrix between each sample type (unvisited nectar, visited nectar, etc.)
using the Bray-Curtis similarity index. An iterative process was then applied to
create a best-fit set of axes to represent scent profile similarity between sample
types with close proximity in space indicating greater similarity in scent profiles
between samples and greater distances representing greater dissimilarity between
samples (Clarke and Gorley 2006, Jürgens et al. 2002, Majetic et al. 2014). We performed
a cluster analysis on the similarity indices to determine the level at which
sample types clustered together and superimposed the results on the MDS plots
using PRIMER v6 (Clarke and Gorley 2006). One unvisited nectar sample from
SREC did not contain any VOCs and had to be removed from the MDS in order to
fit the MDS plot (Fig. 1); however, the sample was included in all PERMANOVAs.
Because the data were not normal and did not fit the assumptions of a multivariate
ANOVA (MANOVA), we used PERMANOVA, an analogous analysis that is
distribution independent, to analyze the scent profiles of samples (Anderson 2001,
Majetic et al. 2014). We used the Bray-Curtis similarity indices, to perform a series
of PERMANOVAs on different data sets. PERMANOVAs were used on similarity/
dissimilarity resemblance indices to calculate pseudo-F and permutation-based
P-values to test for the response of variables (VOCs) to one or more factors (i.e.,
sample type, population, and Metschnikowia strain). We performed the following
PERMANOVAs on the data: 1) a 2-way PERMANOVA to test for differences
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between sample type and population (FAR or SREC), and the interaction between
sample type and population, 2) one-way PERMANOVAs to test for differences
within a sample type, within a strain, within a species, or between sample types
where population was not an issue, and 3) a nested PERMANOVA to determine
whether there were differences in culture age nested within strain nested within
Metschnikowia species. When PERMANOVA results indicated significant differences
in scent profiles, we conducted post hoc pairwise tests in PERMANOVA.
Spearman’s rank correlations (PROC CORR, SAS Institute Inc. 2012) were used to
test for an association between the VOCs present in the headspace of yeast species
grown in pseudonectar.
We used initial (N0) and final cell counts (Nf) to calculate the intrinsic growth
rate, r = (ln Nf – ln No)/t, of each yeast strain in the pseudonectar for each growth
period (24 h, 48 h, or 72 h). For each growth period, we used 7 replicates of each
yeast species (M. reukaufii n = 3 for 27SREC3, n = 4 for 3FAR2, M. koreensis n = 3
for 3FAR3, n = 4 for 7FAR3). Univariate analyses (PROC UNIVARIATE, SAS
Institute Inc., 2012) indicated these data were non-normally distributed. Therefore,
we used non-parametric Wilcoxon and Kruskal-Wallis tests (NPAR1WAY, SAS
Institute Inc., 2012) to compare growth rates and final colony forming units
(CFU) for each of the strains and across species. Because strains within each
Metschnikowia species were not significantly different in terms of growth rate or
final CFU, we pooled the strains when comparing across Metschnikowia species.
Results
Yeast Species Isolated from Silene caroliniana
A number of yeast strains were isolated from the nectar samples collected at
FAR and SREC in 2011 (Table 1, A. Golonka unpubl. data). Using molecular
systematic techniques, the 16 molecular sequences yielded approximately
4 distinct operational taxonomic units (OTU). Type 1 strains were pink pigmented
species (1a: Aureobasidium pullulans—identified by pseudohyphae on plate,
1b: Rhodotorula spp.). Because Type 1 species were rare in the nectar samples
(A. Golonka unpubl. data), they were not a focus of this study. We identified the
type 2 strain as Metschnikowia reukaufii, and type 3 as Metschnikowia koreensis.
These 2 species were the predominant inhabitants of the nectar and were the
focus of the pseudonectar experiments. Four strains were used, 2 each of the
Metschnikowia species: M. reukaufii (3FAR2 and 27SREC3) and M. koreensis
(7FAR3 and 3FAR3).
Scent of Silene caroliniana
Unvisited flowers. We identified a total of 25 VOCs from the headspace of
unvisited Silene caroliniana flowers, and 13 of them were unique to these samples
(Table 2). Typical VOCs present in other Silene species, such as terpenoids and
lilac aldehyde isomers (Dötterl et al. 2005, Dötterl and Jürgens 2005, Waelti
et al. 2008), were not detected. The scent compounds found only in unvisited
flowers included on average: 32% ethyl acetate, 14% 4-methyl-1-pentanol, 11%
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
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2-ethoxy-2-methyl-propane, 5.2% hexyl acetate, 0.6% isopentyl acetate, 0.4%
methyl acetate, 0.4% octane, 0.3% 2-pentanol, 0.01% hydroxymethylacetate,
and various unidentified compounds (Table 2). Unvisited flower samples also
contained compounds produced by yeast species or compounds present in visited
nectar samples including, on average: 13% 3-methyl-1-butanol, 7.7% 2-methyl-
1-propanol, 3.0% 2-methyl-1-butanol, 2.6% 2,2,-dimethyl-1,3-propanediol, 0.5%
ethanol, 0.3% acetone, 0.2% heptane, 0.2% acetic acid, 0.1% isobutyl acetate,
0.08% vinyl acetate, and 0.07% 2-methyl-2-butanol.
PERMANOVA indicated a significant effect of population on overall scent of
unvisited flower samples (Pseudo-F = 4.38, df = 1, P = 0.02); however, a comparison
of the relative percent areas for compounds detected in the unvisited flower
samples from FAR and SREC were not significantly different from each other,
except for 2 compounds: 2-ethoxy-2-methyl-propane (χ2 = 6.6, df = 1, P = 0.01),
and an unidentified compound with retention index 914 (χ 2 = 4.8, df = 1, P = 0.03)
which predominantly occurred in FAR samples and not in any other sample group
(Table 2). Spatial analysis of the data using MDS and clustering supported these
findings visually as all the unvisited flower samples clustered together at the 5%
similarity level regardless of population (Fig. 1A).
Unvisited nectar. We obtained only 1 sample for population FAR, therefore, we
only used data from SREC (n = 5) for this analysis. We detected a total of 5 VOCs
from the headspace of unvisited nectar samples from SREC (Table 2). Spatial
analysis of the data using MDS and cluster analysis indicated these samples cluster
together and have a scent different than unvisited flower and visited nectar samples
(Fig. 1A). Of the 5 VOCs present, 1 is associated with yeast-inhabited pseudonectar
(19% ethanol), 2 are associated with unvisited flowers (25% heptane and 20% vinyl
acetate), and 2 were only found in the unvisited nectar samples (0.19% 1-methoxy-
2-propanone and 15% of an unknown compound with retention index 1521).
Unvisited flowers versus unvisited nectar. Statistical analysis using
PERMANOVA found a significant effect of sample type on scent (Pseudo-F = 3.43,
df = 1, P = 0.001). A spatial analysis of the data using MDS supported these findings
and suggested substantial differences in the scent of unvisited flowers and unvisited
nectar samples (Fig. 1A). A PERMANOVA within unvisited flower samples
Table 1. Yeast species submitted to GenBank (isolated in 2011). Results are GenBank
BLAST search results from 5-16-13 with base pair matches for D1/D2 of 26S and ITS1-
ITS2. P-values < 4e-134. N.S. means the region was not sequenced by other researchers.
Morphotype (strain) Closest species identification GenBank accession # D1/D2 ITS1-2
1a (7SREC1) Aureobasidium pullulans KF059238 580/581 382/382
1b (26SREC1) Rhodotorula spp. KF059239 592/596 465/466
2 (27SREC3) Metschnikowia reukaufii KF059240 498/505 274/278
2 (3FAR2) Metschnikowia reukaufii KF059241 513/524 293/299
3 (3FAR3) Metschnikowia koreensis KF059236 506/514 N.S.
3 (7FAR3) Metschnikowia koreensis KF059237 506/514 N.S.
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2014 Eastern Biologist No. 3
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Table 2. Relative average percent area of each volatile organic compound detected in unvisited flowers (UF), unvisited nectar (UN), visited
nectar (VN), and pseudonectar (PN) with cells of M. reukaufii or M. koreensis. Populations and strains are listed below sample type along
with the number (n) of samples. Compounds are listed by order of their Kovats Index (KI) and retention time in minutes (RT). Italicized
compounds are produced entirely by microbes or have higher relative percentages in visited samples. All scent compounds, except those
with an * by their name, were verified using authentic standards. Those compounds not verified were identified by obtaining >90% matches
with library spectra. For the unidentified compounds, mass spectral ion fragments are listed in descending order of ion abundances with
relative abundance in parentheses, the top 10 are fragments listed. Relative % values may not total to 100% due to the absence of scent
compounds in some samples.
UF UN VN PN—M. reukaufii PN—M. koreensis
Identified compounds: SHR5XLB
KI (RT)
FAR
n = 4
SREC
n = 5
SREC
n = 5
FAR
n = 4
SREC
n = 6
27SREC3
n = 10
3FAR2
n = 14
3FAR3
n = 10
7FAR3
n = 14
Acetaldehyde 439 (1.00) 4.8
Ethanol 488 (1.09) 0.9 19.0 18.0 18.0 91.0 88.0 91.0 86.0
Methyl acetate* 523 (1.19) 0.9
Acetone 526 (1.20) 0.6 3.4 9.4 0.6 0.5
2-Methyl-2-propanol 559 (1.34) 0.2 0.2
Butanal* 571 (1.41) 0.0
Vinyl acetate* 604 (1.64) 0.2 20.0 0.2
2-Ethoxy-2-methyl-propane 614 (1.71) 22.0 0.3
Ethyl acetate 619 (1.74) 0.3 63.0
2-Methyl-1-propanol 633 (1.85) 15.0 0.4 12.0 3.2 5.3 8.4 3.1 3.7
2-Methyl-2-butanol 647 (1.98) 0.1 0.0 0.1 0.2
Acetic acid 659 (2.10) 0.4 0.2 3.3
1-Methoxy-2-propoxy-ethane* 692 (2.50) 23.0
Heptane 702 (2.66) 0.4 25.0 1.4
1-Methoxy-2-propanone 709 (2.78) 0.2
2-Pentanol 714 (2.87) 0.5
Hydroxymethylacetate 733 (3.28) 0.0
3-Methyl-1-butanol 751 (3.75) 25.0 0.2 4.3 2.3 3.1 1.5 1.2
2-Methyl-1-butanol 754 (3.85) 5.4 0.6 0.6 0.7 0.5 0.4
2,3-Dimethyl-hexane* 766 (4.20) 0.4
Isobutyl acetate* 790 (5.10) 0.1 0.1 0.1
Octane 801 (5.56) 0.5 0.2
4-Methyl-1-pentanol 860 (6.70) 5.5 23.0
4-Methyl-octane* 873 (6.99) 0.4
2-Butoxy ethanol* 923 (7.91) 2.3
Isopentyl acetate 930 (8.00) 0.4 0.8
(Contd.)
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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UF UN VN PN—M. reukaufii PN—M. koreensis
Identified compounds: SHR5XLB
KI (RT)
FAR
n = 4
SREC
n = 5
SREC
n = 5
FAR
n = 4
SREC
n = 6
27SREC3
n = 10
3FAR2
n = 14
3FAR3
n = 10
7FAR3
n = 14
2,2-Dimethyl-1,3-propanediol 970 (8.50) 3.5 1.6 0.6 0.2
Hexyl acetate 1028 (9.17) 3.0 7.3
2-Ethyl-1-hexanol 1044 (9.32) 16.0 27.0
Unidentified compounds [m//z (rel abund)]:
44(100), 39(68), 42(67), 41(60), 43(58), 40(39), 58(27) 675 (2.28) 0.1
41(100), 39(61), 43(56), 44(38), 57(38), 58(31) 684 (2.39) 0.1
C8 alkane: 43(100), 41(38), 85(29), 57(26), 71(16), 39(14),
42(11), 55(10), 56(9), 70(9) 829 (6.08) 1.3 12.0
41(100), 56(65), 43(34), 31(24), 42(24), 69(11) 846 (6.40) 1.5
133(100), 151(68), 77(39), 45(33), 135(27), 68(23), 75(11),
134(10), 152(5), 47(4) 914 (7.80) 15.0 11.0
41(100), 45(93), 57(70), 42(50), 31(35), 43(19), 56(18), 39(17) 959 (8.36) 0.1
43(100), 41(23), 71(21), 57(14), 87(9), 39(8), 59(7), 42(4) 988 (8.74) 0.0
43(100), 57(61), 71(53), 41(51) 1021 (9.10) 0.3
43(100), 57(77), 41(59), 71(29), 85(15) 1055 (9.43) 3.2
59(100), 43(71), 55(41), 41(41), 67(32), 31(31), 39(25),
94(23), 68(22), 93(22) 1088 (10.13) 2.6
41(100), 43(58), 57(57), 44(39), 39(38), 55(32), 56(20),
42(13), 68(11) 1130 (10.13) 0.8
91(100), 92(20), 39(16), 65(15) 1145 (10.26) 1.1
43(100), 59(99), 68(62), 39(29), 67(28), 94(26), 41(24),
55(11), 53(10) 1193 (10.67) 2.1 1.1
55(100), 31(80), 43(77), 41(51), 93(48), 67(44), 111(44),
39(34), 71(19), 53(18) 1241 (11.03) 2.2 21
41(100), 7935), 69(34), 91(31), 39(25), 67(22), 93(17),
77(16), 53(15), 55(15) 1459 (12.59) 1.9
41(100), 93(34), 69(32), 55(30), 77(26) 1521 (13.00) 15.0
41(100), 120(89), 43(79), 57(62), 39(54), 55(50), 138(48),
65(48), 121(47), 70(42) 1850 (15.37) 3.0
41(100), 69(82), 39(51), 109(50), 55(46), 67(43), 65(34),
120(32), 138(31), 43(28) 1923 (15.90) 2.3
Sample % with VOCs absent 20.0
Table 2 (contd.)
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
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Figure 1. A. All
sample types except
pseudonectar-
Metschnikowia samples.
B. All nectar
samples including
visited, unvisited,
and pseudonectar-
Metschnikowia samples.
At 10% similarity
all VN samples
cluster together
with PN samples. C.
Only pseudonectar-
Metschnikowia samples,
24-h and 48-h
samples as in Table
2. Two-dimensional
MDS analysis based
on Bray-Curtis similarity
indices calculated
from relative
areas of each compound
across sample
types listed in Table
2 with superimposed
group-averaged clustering
from Bray-
Curtis similarities.
Solid-lined clusters
indicate 15% similarity
level, dashlined
clusters indicate
different levels
of similarity based
on samples types as
indicated on figure.
UF_F = unvisited
flowers from FAR,
UF_S = unvisited
flowers from SREC,
UN_S = unvisited
nectar from SREC, VN_F = visited nectar from FAR, VN_S = visited nectar from SREC,
Mr27SREC3 = pseudonectar with M. reukaufii strain 27SREC3, Mr3FAR2 = pseudonectar
with M. reukaufii strain 3FAR2, Mk3FAR3 = pseudonectar with M. koreensis strain
3FAR3, Mk7FAR3 = pseudonectar with M. koreensis strain 7FAR3.
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2014 Eastern Biologist No. 3
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indicated a significant effect of population; however, nonparametric analyses
indicated there were no significant differences among SREC and FAR populations
in relative percent of each VOC for unvisited flowers except for 2-ethoxy-2-methyl
propane and an unidentified compound with retention index 914 (compounds not
found in unvisited nectar samples). To compare the relatively few compounds
present in unvisited nectar samples to unvisited flower samples, we pooled values
for both populations of unvisited flower samples (n = 9) and used the means to
determine whether there were significant differences between unvisited flower
and unvisited nectar (n = 5) samples. Of the 5 compounds present in the unvisited
nectar-samples, 3 were also present in unvisited flower samples (ethanol, vinyl
acetate, and heptane), but relative abundances of these compounds were not significantly
different among unvisited samples. However, the following 8 compounds
were found in relatively high abundances (>2% relative peak area) in the unvisited
flowers, but were not found in the unvisited nectar samples: 32% ethyl acetate, 14%
4-methyl-1-pentanol, 13% 3-methyl-1-butanol, 11% 2-ethoxy-2-methyl-propane,
7.7% 2-methyl-1-propanol, 5.2% hexyl acetate, 3.1% 2-methyl-1-butanol, and
2.6% 2,2-dimethyl-1,3-propanediol (Table 2).
Characterization of yeast-Silene caroliniana scent composition
Visited nectar. We confirmed the presence of yeasts in all visited nectar samples.
SREC had a lower mean cell count (± SE) than FAR (SREC: 607 ± 328, FAR:
4350 ± 2840), but the cell counts were not significantly different from each other
(P > 0.14). The total ion chromatogram peak areas for visited nectar samples from
FAR and SREC were not significantly different from each other (Table 3). In the
headspace of visited nectar samples from SREC and FAR, a total of 20 VOCs
were detected, 11 of which were not identified (Table 2). Statistical analysis
with PERMANOVA indicated a significant effect of population for visited nectar
samples (Pseudo-F = 2.86, df = 1, P = 0.02). A visual analysis of the data using
Table 3. Mean total ion chromatogram peak area ± SE for volatile organic compounds found in
samples. An * indicates significant differences within sample type. Population or strain refers to
the population from which the sample was taken, either (FAR) or (SREC), and strain indicates
the strain of Metschnikowia grown in pseudonectar (PN). Values for PN samples are based on
an average of the 24-h and 48-h samples.
Sample type Population or strain n Average total peak area (±SE)
Unvisited Flowers FAR 4 1.74 × 106 (± 1.06 × 106)
SREC 5 3.86 × 106 (± 2.76 × 106 )
Unvisited nectar SREC 10 1.38 × 104 (± 1.25 × 104 )
Visited nectar FAR 4 6.18 × 105 (± 6.67 × 104 )
SREC 6 4.60 × 105 (± 1.20 × 105 )
PN with M. reukaufii
(*P = 0.014)
27SREC3 10 6.44 × 106 (± 1.80 × 106 )
3FAR2 14 2.54 × 106 (± 5.67 × 105 )
PN with M. koreensis 3FAR3 10 1.88 × 106 (± 3.91 × 105 )
7FAR3 14 2.91 × 106 (± 7.34 × 105 )
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MDS suggested no significant difference between the overall scents of visited
nectar samples from FAR and SREC at the 10% similarity level (Fig. 1B); however,
within the visited nectar samples SREC did contain a higher average relative
percent of two compounds compared to FAR samples (acetone: χ2 = 3.7, df = 1,
P = 0.05; retention index 829: χ2 = 4.7, df = 1, P = 0.03), while FAR samples had a
higher relative percent area of the unidentified compound with retention index 914
(χ2 = 5.6, df = 1, P = 0.02). Visited nectar samples cluster together with pseudonectar
samples containing Metschnikowia species at the 10% similarity level (Fig.
1B). Of the 20 compounds detected in visited nectar samples, 4 were also found in
pseudonectar samples containing the 2 isolated Metschnikowia yeast species: 18%
ethanol, 7.6% 2-methyl-1-propanol, 6.4% acetone, and 2.2% 3-methyl-1-butanol.
One of these 4 compounds, 2-methyl-1-propanol, is known to be produced by
Metschnikowia species and is also found in unvisited flower samples. This compound
may be present in unvisited flowers due to microbes on the sticky hairs. Of
the remaining identified compounds, 0.7% heptane was found in both unvisited
flower- and unvisited nectar samples, and 0.4% 2,2-dimethyl-1,3-propanediol was
found only in unvisited flower samples. Other known compounds found exclusively
in visited nectar included: 22% 2-ethyl-1-hexanol, 12% 1-methoxy-2-propoxyethane,
and 0.2% 4-methyl-octane.
Visited nectar versus unvisited nectar. The results of the MDS analysis suggested
that the scent of visited nectar samples were substantially different from unvisited
nectar samples (Figs. 1A and 1B). Statistical analysis using PERMANOVA also
indicated a significant difference between unvisited nectar and visited nectar
samples for overall scent (Pseudo-F = 4.13, df = 1, P = 0.001). As indicated earlier,
PERMANOVA results suggest a population effect on the overall scent profile of
visited nectar samples; however, except for acetone and 2 unidentified compounds
with retention indices of 829 and 914, the total ion chromatogram peak areas and
relative percent areas of each VOC for visited nectar samples from FAR and SREC
were not significantly different from each other using nonparametric analyses.
Therefore, samples from both populations were pooled and the means were used
to determine whether there were significant differences between visited nectar
samples (n = 10) and unvisited nectar samples based only on SREC (n = 5). The
mean total peak area of visited nectar samples was significantly lower than the
total peak area produced by unvisited nectar samples (χ2 = 9.4, df = 1, P = 0.002,
Table 3); however, 20 VOCs were detected in the headspace of visited nectar
samples while only 5 VOCs were detected in unvisited nectar samples (Table 2).
Spatial analysis of the data using MDS indicated visited nectar samples were more
similar to the scent of the pseudonectar-Metschnikowia samples than unvisited
nectar samples (Fig. 1B). The additional VOCs in visited nectar samples included
4 Metschnikowia-associated compounds: ethanol, acetone, 2-methyl-1-propanol,
3-methyl-1-butanol. Two of these compounds were significantly higher in visited
nectar samples than in unvisited nectar samples: acetone (χ2 = 6.7, df = 1, P = 0.01)
and 2-methyl-1-propanol (χ2 = 4.3, df = 1, P = 0.04). Visited nectar samples
contained more Metschnikowia-associated compounds than unvisited nectar
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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samples (4 compounds versus 2). Unique compounds were only detected in visited
nectar samples that were not present in unvisited nectar samples, unvisited flower
samples, or in the pseudonectar samples containing the 2 Metschnikowia species
tested. These included: 1-methoxy-2-propoxy-ethane, 4-methyl-octane, 2-ethyl-
1-hexanol, and various unidentified compounds (Table 2).
Characterization of yeast-specific scent chemistry and growth
We compared the relative abundances of VOC compounds for pseudonectar
(49.9% sugars in sterile water) inoculated with 2 species of Metschnikowia isolated
from the visited FAR and SREC nectar samples. A visual analysis of the MDS space
indicated that both species cluster together at the 15% similarity level (Fig. 1C).
A nested PERMANOVA indicated there was no significant effect of species on
overall scent profile (Pseudo-F = 2.09, df = 1, P = 0.13); however, there were
significant effects of strain nested within species (Pseudo-F = 3.16, df = 2, P = 0.02)
and culture age nested within strain nested within species (Pseudo-F = 2.04, df = 8,
P = 0.02). Post hoc pairwise tests indicated there were significant differences among
strains within M. reukaufii (t = 2.15, df = 1, P = 0.023), but there were no significant
differences among strains within M. koreensis (t = 1.29, df = 1, P = 0.17). Post hoc
pairwise tests within each species and strain indicated there were no significant
differences between 24-h and 48-h samples (P > 0.24 for all strains). Therefore, we
pooled results for samples of pseudonectar incubated for 24 h and 48 h after yeast
inoculation (n = 24 for each yeast species) for comparison with field-collected nectar
samples (Tables 2 and 3). The statistics below reflect this pooling.
Pseudonectar containing M. reukaufii. Strain 27SREC3 produced a significantly
higher peak area for the total ion chromatogram than did strain 3FAR2 (χ2 = 6.1,
df = 1, P = 0.01, Table 3); however, the relative percent area for compounds identified
in the headspace of pseudonectar containing strains 27SREC3 and 3FAR2
were not significantly different from each other based on nonparametric analyses.
A total of 7 VOCs were identified in the headspace of these samples, most of
which were aliphatic alcohols including: 90% ethanol, 6.9% 2-methyl-1-propanol,
2.7% 3-methyl-1-butanol, 0.6% 2-methyl-1-butanol, 0.2% 2-methyl-2-propanol,
and 0.01% 2-methyl-2-butanol. Additionally, acetic acid (0.2%) was produced
by strain 27SREC3, and 2-methyl-2-butanol (0.02%) was produced by strain
3FAR2 (Table 2).
Pseudonectar containing M. koreensis. The peak areas of the total ion chromatogram
of M. koreensis strains were not significantly different from each other (Table
3). In addition, the relative percent area for compounds detected in the headspace
of strains 3FAR3 and 7FAR3 grown in pseudonectar were not significantly different
from each other as determined by PERMANOVA and nonparametric analyses. A
total of 15 VOCs were detected, most of which were aliphatic alcohols including:
89% ethanol, 3.4% 2-methyl-1-propanol, 1.3% 3-methyl-1-butanol, 0.5%
2-methyl-1-butanol, and 0.1% 2-methyl-2-butanol. The other compounds present
were: 2.4% acetaldehyde, 1.7% acetic acid, 1.1% 2-butoxy-ethanol, 0.5% acetone,
0.2% 2,3-dimethyl-hexane, 0.09% isobutyl acetate, 0.09% vinyl acetate, 0.02%
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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butanal, and 2 unidentified trace level compounds (Table 2). Strain 7FAR3 produced
12 compounds while strain 3FAR3 produced only 9 compounds with slight differences
in the compounds produced. For example, 7FAR3 produced acetaldehyde
(4.8%) whereas 3FAR3 produced acetic acid (3.3%).
Comparison of Metschnikowia species. We detected at least twice as many
VOCs in the headspace of M. koreensis (15) compared to M. reukaufii (7) with
6 VOCs common to both species (Tables 2 and 4). Within each species, there were
no significant differences between strains in the amounts of the 6 common VOCs.
Therefore, for each species, we pooled the data for the 2 strains. The appropriateness
of pooling was confirmed by spatial analysis of these data using MDS and clustering
(Fig. 1C). We then used the means for each species (data pooled for both strains
and from 24-h and 48-h samples) to determine whether there were significant differences
in the quantities of the most common VOCs found in samples of M. reukaufii
and M. koreensis (n = 24 for each species, Table 4). Of the 6 VOCs common to
both species, M. reukaufii produced significantly higher relative abundances than
M. koreensis for 3 of the VOCs: 3-methyl-1-butanol, 2-methyl-1-butanol, and
2-methyl-1-propanol (P values in Table 4). However, PERMANOVA (P = 0.13) and
spatial analyses of overall scent profile using MDS and clustering indicated the two
species of Metschnikowia produced a similar overall scent and clustered together at
the 15% similarity level, regardless of strain type or culture age (Fig. 1C).
Temporal differences in compound production. For the 6 VOCs identified in
both species, there was a significant temporal difference across growth periods for
1 VOC in M. reukaufii but none in M. koreensis (Table 5). The relative abundance
of 2-methyl-1-butanol in M. reukaufii strains comprised a larger proportion of the
headspace for 72-h samples (χ2 = 6.3, df = 1, P = 0.04) compared to 24-h and 48-h
samples. Although there were no significant differences in the relative percent
areas of the other shared VOCs, we detected a correlation between ethanol and the
secondary alcohol products in the headspace (Table 5). For M. reukaufii, Spearman
correlation coefficients indicated a negative correlation between ethanol and each
of the following alcohols: 3-methyl-1butanol (ρ = -0.80, n = 36, P < 0.0001),
2-methyl-1-butanol (ρ = -0.72, n = 36, P < 0.0001), and 2-methyl-1-propanol
(ρ = -0.95, n = 36, P < 0.0001). There were significantly positive correlations
Table 4. Average relative percent ± SD of the major volatile organic compounds produced by
Metschnikowia reukaufii or M. koreensis grown in pseudonectar for 24-h and 48-h growth periods.
Sample means are based on 2 strains for each species, n = 24.
Compound M. reukaufii M. koreensis
Ethanol 89.0 (± 7.0) 88.0 (± 13.0)
2-methyl-2-propanol 0.2 (± 0.7) 0.3 (± 1.5)
2-methyl-1-propanol (P = 0.002) 7.1 (± 4.3) 3.5 (± 3.6)
Acetic acid 0.1 (± 0.4) 1.4 (± 4.7)
3-methyl-1-butanol (P = 0.005) 2.7 (± 2.1) 1.3 (± 2.0)
2-methyl-1-butanol (P = 0.038) 0.6 (± 0.8) 0.5 (± 0.1)
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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between each of these 3 alcohols (all P values < 0.0001). For M. koreensis, there was
a negative correlation between ethanol and the same 3 alcohols: 3-methyl-1-butanol
(ρ = -0.38, n = 36, P = 0.02), 2-methyl-1-butanol (ρ = -0.48, n = 36, P = 0.003),
and 2-methyl-1-propanol (ρ = -0.73, n = 36, P < 0.0001). As with M. reukaufii,
there were positive correlations between these 3 alcohols (P values < 0.001).
PERMANOVA analysis indicated an effect of culture age, and post hoc pairwise
tests indicated a significant effect of age for 24-h and 72-h samples of M. reukaufii
3FAR2 (t = 2.06, df = 1, P = 0.04) and M. koreensis 7FAR3 (t = 2.01, df = 1,
P = 0.03).
Growth rates. Culture age did not have a significant effect on final cell counts
for M. reukaufii (χ2 = 0.92, df = 2, P = 0.63, Table 5); however, culture age did have
a significant effect for M. koreensis, with older cultures having higher cell counts
(χ2 = 6.3, df = 2, P = 0.042, Table 5). A comparison across Metschnikowia species
for the 48-h growth period indicated that M. koreensis (8000 CFU/μL) had a significantly
higher final cell number than M. reukaufii (6300 CFU/μL, χ2 = 3.9, df = 1,
P = 0.048, Table 5). At 48 h, differences in the growth rates for these 2 species
approach significance (χ2 = 3.0, df = 1, P = 0.085), with M. koreensis having a
higher growth rate than M. reukaufii (Table 5).
Comparison of yeast-specific scent chemistry to visited nectar
To compare scent chemistry of pseudonectar samples to visited nectar samples,
we pooled values for 24-h and 48-h samples to produce the means in Tables 2 and
3. The statistics below reflect this pooling. The 2 species of Metschnikowia grown
in pseudonectar produced higher total peak areas than those grown in visited
nectar samples (M. reukaufii: χ2 = 17, df = 1, P < 0.0001, M. koreensis: χ2 = 15,
df = 1, P = 0.0001, Table 3). Most of the visited nectar samples clustered separately
from the pseudonectar-Metschnikowia samples at the 15% similarity level, but
Table 5. Average relative percent ± SD of the major volatile organic compounds produced by
Metschnikowia reukaufii or M. koreensis grown in pseudonectar, for 24-h, 48-h, and 72-h growth
periods. Also presented are mean ± SD of final cell concentration (CFU/μL) and mean growth
rate (CFU/min) for each species and each growth period. For each species and culture age n = 12
for relative percentages of each VOC, n = 7 for cell counts and growth rate.
Compound
M. reukaufii M. koreensis
24 h 48 h 72 h 24 h 48 h 72 h
Ethanol 91.0±3.8 88.0±8.4 75.0±28 91.0±6.2 85.0±17.0 84.0±16.0
2-methyl-2-propanol 0.4±1.0 0 0 0.6±2.1 0 0
2-methyl-1-propanol 6.2±2.0 8.1±5.7 12.0±11.0 2.4±2.2 4.5±4.5 6.4±6.3
Acetic acid 0 0.2±0.6 0.3±0.6 1.1±3.9 1.6±5.6 0
3-methyl-1-butanol 2.4±1.3 3.1±2.7 8.8±11.0 1.2±1.4 1.4±2.6 5.3±6.7
2-methyl-1-butanol 0.5±0.5 0.8±1.1 3.5±6.6 0.3±0.5 0.7±1.3 2.1±3.8
Final CFU/μL (x103) 5.6±1.2 6.3±1.7 6.2±1.2 7.1±0.9 8.0±1.2 9.0±1.9
Growth rate (x10-5) -6.0±16.0 0.4±10.0 0.4±4.8 11.0±8.6 9.5±5.2 9.1±4.8
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
19
visited nectar samples clustered together with the pseudonectar-Metschnikowia
samples at the 10% similarity level (Fig. 1B). Separate PERMANOVA analyses
indicated that the overall scent profile of VN was significantly different from
pseudonectar-M. reukaufii (Pseudo-F = 45.9, df = 1, P = 0.0001) and M. koreensis
(Pseudo-F = 39.1, df = 1, P = 0.0001). We identified a total of 20 VOCs from
the headspace of VN samples from SREC and FAR, which is more diverse than
the 7 VOCs detected in pseudonectar-M. reukaufii samples and the 15 VOCs in
M. koreensis samples. Examining the 6 VOCs identified in both pseudonectar-
Metschnikowia species (Table 4), both strains of M. reukaufii produced significantly
higher relative abundance of VOCs than visited nectar samples for the
following compounds: ethanol (χ2 = 21, df = 1, P < 0.0001), 3-methyl-1-butanol
(χ2 = 5.5, df = 1, P = 0.02), and 2-methyl-1-butanol (χ2 = 12, df = 1, P = 0.0006).
However, there was no significant difference in VOC production for 2-methyl-
2-propanol, 2-methyl-1-propanol, and acetic acid (Table 2). Both strains of M.
koreensis also produced significantly higher relative abundances compared to
visited nectar samples for ethanol (χ2 = 20, df = 1, P < 0.0001), but there were
no significant differences for 3-methyl-1-butanol, 2-methyl-1-butanol, 2-methyl-
1-propanol, 2-methyl-2-propanol, or acetic acid (Table 2).
Discussion
Scent of Silene caroliniana
Overall floral scent. Silene caroliniana flowers are not entirely scentless as
previously thought (Reynolds et al. 2009); however, the total VOC peak area produced
by these flowers is much lower than that of other scented Caryophyllaceae
species. For example, Dianthus species are over 40 times more fragrant than S.
caroliniana, (J. Freeman, B.O. Johnson, A. Golonka, unpubl. data). Of the 25
volatile organic compounds detected from unvisited flowers of S. caroliniana, 13
are considered specific to the flower and indicate flowers have an odor that pollinators
may be able to detect. There was also some indication that overall scent
differed among the sampled populations, perhaps indicating different populations
have variable scent profiles. The predominant VOCs detected were not similar
to the compounds isolated from other Silene species (Dötterl and Jürgens 2005,
Dötterl et al. 2005, Knudsen et al. 2006, Muhlemann et al. 2006, Waelti et al.
2008). Instead of lilac aldehydes or benzenoid compounds which are found in
other species of Silene, over 62% of the scent profile of unvisited S. caroliniana
flowers was attributed to four aliphatic compounds: ethyl acetate, 4-methyl-
1-pentanol, 2-ethoxy-2-methyl-propane, and hexyl acetate. At least two of these,
the aliphatic esters ethyl acetate and hexyl acetate are known to be associated
with bee-pollinated flowers (Dobson 2006).
Of the 25 VOCs isolated from unvisited S. caroliniana flowers, 12 may be contributed
by the microbes that are associated with the flowers and with the sticky hairs on
this plant species. As implied by the nickname “catchfly,” Silene caroliniana flowers
are never entirely without microbes when collected from the field due to the sticky
nature of the hairs present on stems and sepals of the flowers. It is difficult to collect
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
20
a sterile flower sample, even when using sterile forceps, and alcohol cannot be used
when analyzing floral scent because it is volatile. Because of this aspect of the flower,
unvisited flowers often contained small amounts of microbe oriented compounds
which were excluded from the 13 floral scent compounds discussed above.
Contribution of nectar to overall scent. The nectar of S. caroliniana was predominantly
unscented, with only 5 VOCs detected from unvisited nectar samples.
However, two nectar-specific compounds were isolated: 1-methoxy-2-propanone
and an unknown compound at retention time 13.00 min with a Kovats retention
index of 1521 (Table 2). Both of these compounds were not detected in the scent
profile of unvisited flowers or controls. Research on Silene latifolia and other
plant species indicates that different parts of flowers may produce different scent
compounds (Dötterl and Jürgens 2005, Dudareva and Pichersky 2006, Jetter 2006).
This research indicates that S. caroliniana nectar contains few volatile organic
compounds and may indicate that nectaries are not the source of the floral scent
detected in unvisited flowers. It is unclear whether the petals, sepals, anthophores,
gynoecium, or flower base of this plant produce different VOCs. Further research
is needed to determine which floral structures produced the isolated VOCs and
whether there are spatial fragrance patterns in this species as well.
Importance of yeast to Silene caroliniana’s scent profile
Scent compounds emitted by flowers are known to attract nectar-feeding pollinators
(Cunningham et al. 2004, Dötterl et al. 2006, Farré-Armengol et al. 2013,
Galen and Kevan 1983, Junker and Bluthgen 2010, Knudsen and Tollsten 1993,
Raguso 2008, Wright and Schiestl 2009). Previous studies suggest that yeast-like
odors may also be attractive to insects (Goodrich and Raguso 2009, Goodrich et al.
2006, Guerenstein et al. 1995, Herrera et al. 2008), and that microbial organisms
may mediate signaling in plant-pollinator interactions (Goodrich et al. 2006, Pozo
et al. 2009, Raguso 2004). Several studies have also established that nectar is altered
after a pollination event and that microbes are key components in altering nectar
quality (Canto et al. 2007, 2008; de Vega et al. 2009; Goodrich et al. 2006; Herrera
et al. 2008; Herrera and Pozo 2010). Alterations in nectar composition are also
known to impact a plant’s fitness (Golonka 2002, Vannette et al. 2013). This study
indicates that the presence of microbes in or on flowers may alter the scent profile
of a plant species. A comparison of the VOCs present in unvisited nectar samples
(5 VOCs) to visited nectar samples (20 VOCs) indicates that the scent profile of
S. caroliniana changes after being visited by pollinators. The ramifications of this
alteration are not explored here, but these changes in scent could potentially alter
pollinator visitation patterns among visited and unvisited flowers which could
potentially alter plant fitness. Relatively high concentrations of yeast, ranging from
607 to 4350 CFU/μL, isolated and identified from visited nectar samples along
with the difference in VOCs from visited and unvisited nectar samples indicate that
microbes inhabiting the nectar of this plant contribute to the volatile compounds.
These concentrations of yeast are similar to those found in Silene latifolia (Golonka
and Vilgalys 2013) and other North American plant species (Belisle et al. 2012,
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
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Golonka and Vilgalys 2013) but are lower than plant species studied on other
continents (deVega et al. 2009, Herrera et al. 2009).
Of the 20 volatile organic compounds detected in the visited nectar samples,
13 were found exclusively in these samples and are attributed to the presence of
microorganisms in nectar. Four of these VOCs are potentially associated with M.
reukaufii and M. koreensis, as indicated by comparison of the visited nectar samples
with samples from isolated yeast species grown in pseudonectar. The greater
number of VOCs found in the nectar of visited flowers indicates that the compounds
associated with visited nectar were produced by several different types of microorganisms,
some of which were not included in this study (e.g., bacteria). In this study
we focused on the yeast species isolated from nectar (Table 1), particularly species
of Metschnikowia. The compounds produced by these microorganisms and found
in visited nectar are associated with metabolic processes and include fermentation
by-products such as ethanol, 2-methyl-1-propanol, acetone, 3-methyl-1-butanol,
and by-products of other metabolic processes (Table 2, italicized compounds).
Characterization of yeast-specific scent chemistry
Ethanol and other aliphatic alcohols were produced by Metschnikowia species
found in visited nectar of Silene caroliniana. Six VOCs were common between
the 2 species of Metschnikowia grown in pseudonectar with over twice as many
compounds produced by M. koreensis (15 VOCs) versus M. reukaufii (7 VOCs).
Volatile organic compounds from these species grown in pseudonectar included a
high relative abundance of ethanol with other secondary fermentation by-product
alcohols, such as 2-methyl-1-propanol, 3-methyl-1-butanol, 2-methyl-1-butanol,
2-methyl-2-propanol, and 2-methyl-2-butanol in varying relative abundances
(Tables 2 and 4). Metschnikowia reukaufii and M. koreensis appear to produce
significantly different metabolic by-products (Table 5); however, ethanol was the
major component of VOCs in the headspace for both of these species. For both
species, there was a negative correlation between the relative abundance of ethanol
in the headspace and that of the other common secondary metabolic alcohols for
cultures aged over 24 h, 48 h, and 72 h (Table 5). As cultures aged, the abundance
of ethanol decreased whereas the abundance of secondary metabolic alcohols
increased. There was also some indication that M. koreensis grew faster in the
pseudonectar than M. reukaufii Both of these species appear to be well adapted to
an osmotically difficult habitat as indicated by the positive growth rates of these
species in pseudonectar (Table 5) and the consistent presence of these species in S.
caroliniana and several other plant species (A. Golonka, unpubl. data; Golonka and
Vilgalys 2013; Herrera et al. 2009; Pozo et al. 201 1, 2012).
Conclusion
Silene caroliniana flowers do have a scent, but it appears to not be as rich in
composition or strength as other Silene species. Of the 25 VOCs detected in the
flowers of this plant, 12 were contributed by microbial organisms. Nectar was
predominantly unscented and usually did not contribute to the overall scent of
A.M. Golonka, B.O. Johnson, J. Freeman, and D.W. Hinson
2014 Eastern Biologist No. 3
22
the flower. We found only 2 unique nectar-associated compounds. This study
established that microbial organisms alter the scent profile of Silene caroliniana
after pollinator visitation, as seen by the increase in VOCs isolated from
visited floral-nectar. Although Metschnikowia species contributed to the overall
scent profile of this plant, they were not the only microbes that produced VOCs
that may alter post-pollination scent or future pollinator visitation. Our study of
the 2 most common yeast species in S. caroliniana flowers, M. koreensis and M.
reukaufii, indicated that these 2 microorganisms contributed significantly to the
overall scent of the flowers. These 2 yeast species produced 6 of the same VOCs;
however, they differed in the remaining compounds produced, and M. koreensis
produced twice as many VOCs as M. reukaufii. For both yeast species, ethanol was
the major VOC with various aliphatic alcohols as secondary by-products of yeast
metabolism. Future research on this plant species may help determine which floral
parts contribute the majority of the scent compounds and which microorganisms
found in the nectar and on the sticky hairs of this plant contribute the other VOCs
found in the scent profile.
Acknowledgments
The authors would like to acknowledge Dr. Mac Horton at Sandhills Research
and Education Center and Dr. Johnny Stowe at Forty Acre Rock Nature Preserve for
allowing us to collect flower samples at these study sites. This work was partially
supported by a grant from the University of South Carolina Magellan Scholar
program. Additional funding was provided by the University of South Carolina
Lancaster’s Faculty Staff Research and Productive Scholarship Program. The authors
would also like to thank Ms. Wilma Sims at the Statistical Consulting Lab at USC
Columbia for help with the statistics and the external reviewers, especially Dr. Robert
Raguso, for his comments and suggestions throughout the review process.
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